First thing is I would ask for a complete heat loss done for your home. If they say anything but 'yes', tell them thanks but no thanks.
Proper boiler sizing is a must or you will waste money, energy, and shorten the life of your boiler (if oversized), and never be comfortable (if undersized).
Also don't upsize the boiler for your domestic hot water (the indirect tank).
Keep in mind, most wont do a complete heat loss until they get the job (should take a good 3 hours to measure your whole house and input the data). That's fine, as long as they do it. Usually you can get a bid that says something like, "if the heat loss equals this many btu's, then we will use boiler x and this is the price, but if it needs this many btu's (bigger), then we will use boiler y and the price will be..."
Now in your case it looks like the Trio sizes by sections. Some boilers you can just change the firing rate, so the price would be the same for the boiler.
Everything else is fairly standard:
New, properly sized bladder type expansion tank
Low water cut-off
Outdoor reset.
Boiler protection for low return water temperature.
Piping is another matter. With 4 zones, you could end up with some short cycling, so if possible, maybe you can combine zones and control flow, but that really depends on how much you want to spend, and how much piping you want to get into.
Also, see if a contractor can show you a job they are currently working on right now. Pictures of beautiful jobs are nice, but seeing one that's going on might give you a better idea.
And, referrals from current jobs, or people you know that used the contractor.